Basic Information
VIS ID
TVIS44004909
Fusion event
HTLV-1-CDC40 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q21
Reference genome
GRCh37/hg19
Start
110516353/110195150 (Hg38)
End
110516353/110195150 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA6F
Target gene
CDC40
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-1269b
Nearest miRNA
hsa-mir-10398/Upstream/3410930; hsa-mir-1202/Downstream/8873897;
Nearest TSS
ENST00000381078/Upstream/14729; ENST00000453107/Downstream/3825;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/14532, chr6-CpG: 114/Downstream/162501
Upstream sequence
GACTGATAGGACTTAAAAGGGAAGCAAAATTATAATTGTTCCTGGTTGCCAAATGAATCCTCTGTAACTTATCAAATTTTGAACTTTTGTCTTCTATGAC
Downstream sequence
TAGGATGTGTATCACTTGGCAAAGTCTGGAAAAGTATCACTAGGAACTTCACCAGTTTAAATTTTAAATTCCTGTATTTTGAGTATCCATTGTTAGAAAC
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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