Basic Information
VIS ID
TVIS44004912
Fusion event
HTLV-1-chr9 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
31389334/31389336 (Hg38)
End
31389334/31389336 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA9C
Nearest miRNA
hsa-mir-101-2/Upstream/2500381; hsa-let-7a-1/Downstream/1719356;
Nearest TSS
ENST00000422679/Upstream/7846; ENST00000541043/Downstream/995267;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/134571, chr9-CpG: 59/Downstream/995086
Nearby gene
LINC01242(No orient, 980882)
Upstream sequence
TCTTTTCTCCAGGCTTTTAGACACTACTTCTTGAAACCGAAATAGCATTTTAAATACATACCACAGAAATGCTTCACGTTGACCACTTTGAACTAGGTCA
Downstream sequence
ATTTGCATTAATAACTTGGAGGGGAAAGATTCTAAAACCTATTAATCTCTAAAGGTCTCAAATGCCCTCTTGCCTTTATTCTTGCTTTCTTATTTTGTAT
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate