Basic Information
VIS ID
TVIS44004970
Fusion event
HTLV-1-KCNAB1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q25.31
Reference genome
GRCh37/hg19
Start
156200287/156482498 (Hg38)
End
156200287/156482498 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA3D
Target gene
KCNAB1
miRNAs that regulate target gene
hsa-mir-578 ; hsa-mir-526b-5p ; hsa-mir-144-5p ; hsa-mir-3613-3p ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-4282 ; hsa-mir-3606-3p
Nearest miRNA
hsa-let-7g/Upstream/4916503; hsa-mir-1224/Downstream/2800148;
Nearest TSS
ENST00000440867/Upstream/25020; ENST00000473702/Downstream/41749;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/190967, chr3-CpG: 49/Downstream/72349
Upstream sequence
attcttgttggggagacagacaaaaagttagtaagaaagttacattagatggtgataatagaatggagaaacaaactaatcatgggagggggctaggaag
Downstream sequence
ttatgggggtagattttagttaggatgaccTAATAGGAGGAAATGGTGGGCAGTGGGGAGGGGGTTTGGAAAATAGCTTGGACTCCTCCAAaatagcaaa
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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