Basic Information
VIS ID
TVIS44004977
Fusion event
HTLV-1-LOC105376290 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.11
Reference genome
GRCh37/hg19
Start
132001088/129238809 (Hg38)
End
132001088/129238809 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105376290
Nearest miRNA
hsa-let-7a-1/Upstream/846095; hsa-mir-12126/Downstream/630796;
Nearest TSS
ENST00000422679/Upstream/37494; ENST00000427080/Downstream/19545;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/35452, chr9-CpG: 45/Downstream/19541
Nearby gene
LOC101929331(No orient, 43607)
Upstream sequence
agcttttatgttcactggtgttactttaagcttgtatttttacttttttaagacatcgtaagcataactgttttacagactgtgtctgctaattccaata
Downstream sequence
tacaaaattttttgtggtatgcttctgttgtttctgtctgttttttctcatggtgtctttttttgtgtgtgcctagttttctttgtgtgttagccatagt
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate