Basic Information
VIS ID
TVIS44005011
Fusion event
HTLV-1-chr6 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
81433621/80723904 (Hg38)
End
81433621/80723904 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/2184595; hsa-mir-1202/Downstream/9588838;
Nearest TSS
ENST00000381078/Upstream/256946; ENST00000614959/Downstream/827782;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/616935, chr6-CpG: 231/Downstream/1027512
Nearby gene
BCKDHB(+377634) ;
Nearest cancer related gene
BCKDHB(OG, +377634) ;
Upstream sequence
tattcaatcagaaaatcagttctaagcctcgtgtggtggttcacgtctataatcttagtgctttgggaggccaaggcaggaggatttttgaggccaagcg
Downstream sequence
tatgagaccagccttggcaacagtgagactctgtgtctacaaaaattaaaaagttagcagagcatggtggcatctacctgtaattcagctactcagaagg
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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