Basic Information
VIS ID
TVIS44005075
Fusion event
HTLV-1-ROBO2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
77572867/77523716 (Hg38)
End
77572867/77523716 (Hg38)
Orient
+
Location type
Intronic
Target gene
ROBO2
miRNAs that regulate target gene
hsa-mir-145-5p ; hsa-mir-342-5p ; hsa-mir-514b-3p ; hsa-mir-514a-3p ; hsa-mir-6844 ; hsa-mir-4801 ; hsa-mir-4731-3p ; hsa-mir-8084
Nearest miRNA
hsa-let-7g/Upstream/1785353; hsa-mir-12124/Downstream/1984171;
Nearest TSS
ENST00000440867/Upstream/46306; ENST00000471893/Downstream/65065;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/425468, chr3-CpG: 49/Downstream/1495197
Upstream sequence
TTTTCAGTGGGACTTGTTGATCACGTGAGGGAAATTACATAGTTCAAGGTACCAAGTAGTACCAAGTAGACACTCACACTAATTCTTGAAACAGACATTA
Downstream sequence
GCCATGGCATCATCTACACTCCTAGAAAATCAAACAAAGATAGGCAAGCACATCCTTTCTCCCACTGCTAACTGTGCCTCCTTCTCTCATCCTTCGTGAT
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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