Basic Information
VIS ID
TVIS44005089
Fusion event
HTLV-1-LINC02063 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
GRCh37/hg19
Start
4146933/4146820 (Hg38)
End
4146933/4146820 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC02063
Nearest miRNA
hsa-mir-4277/Upstream/2437952; hsa-mir-10397/Downstream/2681033;
Nearest TSS
ENST00000502646/Upstream/11138; ENST00000503188/Downstream/293439;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/184422, chr5-CpG: 39/Downstream/719384
Nearby gene
IRX1(+545416) ;
Upstream sequence
ACAACCAGAGTTTACGTCCAGCCTCACTCTTCATGACCTGGCATTTACTTGTAACGGTGGACTTTACACACCACCCACAGACCCTGTGAAGCTGGGAGAA
Downstream sequence
GCCACTGACATTTTGTCCTTCCTCACATTTCAGTGTGATGAGCACACACAGAATACCTGCCCACTGCGAGGTACGACAGGAAATGCCGGTGACTCAAAGA
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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