Basic Information
VIS ID
TVIS44005105
Fusion event
HTLV-1-chr8 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
78818091/77905856 (Hg38)
End
78818091/77905856 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/939006; hsa-mir-10400/Downstream/1426332;
Nearest TSS
ENST00000518652/Upstream/455159; ENST00000521879/Downstream/242245;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/905035, chr8-CpG: 46/Downstream/610342
Nearby gene
LOC102724874(No orient, 429524)
Upstream sequence
ATTAGCTTAATACCATGGGTTTTCTTAGATAACTATTTATGGCACCTGAGTGCTAGGAGGCTTATCAGAACTAAAATGTCAAATATTTTGGAGAAAATGG
Downstream sequence
GAAACATGTATCTACCAATCTGAGTAGCTAAGCCCTTGTACAAGAAACCATTGGACACGCATGCTGGAATCACTGTTCTGAGGGTAGATGCTATAACACT
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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