VISDB Viral Integration Site DataBase

VIS ID

TVIS44005111

Fusion event

HTLV-1-PTCHD1 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chrX

Cytoband

p22.11

Reference genome

Start

End

23389431/23371314 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-128-3p ; hsa-mir-4735-3p ; hsa-mir-18b-5p ; hsa-mir-18a-5p ; hsa-mir-3613-3p ; hsa-mir-559 ; hsa-mir-548y ; hsa-mir-548w ; hsa-mir-548o-5p ; hsa-mir-548j-5p ; hsa-mir-548i ; hsa-mir-548h-5p ; hsa-mir-548d-5p ; hsa-mir-548c-5p ; hsa-mir-548bb-5p ; hsa-mir-548b-5p ; hsa-mir-548ay-5p ; hsa-mir-548au-5p ; hsa-mir-548as-5p ; hsa-mir-548ar-5p ; hsa-mir-548aq-5p ; hsa-mir-548ap-5p ; hsa-mir-548am-5p ; hsa-mir-548ak ; hsa-mir-548ae-5p ; hsa-mir-548ad-5p ; hsa-mir-548ab ; hsa-mir-548a-5p ; hsa-mir-548n ; hsa-mir-5582-3p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-574-5p ; hsa-mir-4713-5p ; hsa-mir-6867-5p ; hsa-mir-3650 ; hsa-mir-4455 ; hsa-mir-2116-3p ; hsa-mir-532-3p ; hsa-mir-150-5p ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6840-3p ; hsa-mir-8485 ; hsa-mir-4711-3p ; hsa-mir-4796-5p ; hsa-mir-511-3p ; hsa-mir-3178 ; hsa-mir-6787-5p ; hsa-mir-663a ; hsa-mir-1908-5p ; hsa-mir-6804-3p ; hsa-mir-20b-3p ; hsa-mir-6499-5p ; hsa-mir-2114-5p ; hsa-mir-5588-3p ; hsa-mir-3675-3p ; hsa-mir-4684-5p

Nearest miRNA

hsa-mir-23c/Upstream/3354127; hsa-let-7f-2/Downstream/5124241;

Nearest TSS

Nearest CpG islands

None/Target, chrX-CpG: 62/Upstream/35792, chrX-CpG: 38/Downstream/295975

Upstream sequence

gaATTAAAAATCTAAATTCACtgtcttagttggacctcccccagaagctaacctggagtcaagcacttcatgagagtacaatatttggaagataatccca

Downstream sequence

ggaagcactgagaagagaacagcatcatgaggcagggaagaaaagccgtcggctatggaggcattgtcaagccagctactctgtgggcaactggagttta