Basic Information
VIS ID
TVIS44005128
Fusion event
HTLV-1-chr17 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p12
Reference genome
GRCh37/hg19
Start
10864280/10960963 (Hg38)
End
10864280/10960963 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA17A
Nearest miRNA
hsa-mir-1253/Upstream/2773959; hsa-mir-10226/Downstream/1120936;
Nearest TSS
ENST00000595228/Upstream/82770; ENST00000577346/Downstream/280300;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/230790, chr17-CpG: 244/Downstream/279207
Nearby gene
PIRT(-122862) ;
Upstream sequence
acctaatccaacaaaaacaaagaaaaaaggataagaaaatatgaacaaagactccaagaagtctgggattgtgttaaacaaccaaacctaagaataattt
Downstream sequence
atgttcatgaagaagaagagaaatccaaaagtttggaaaacatatttgggggaataattgaggaaaacttccctggccttgctaatgacctagaaatcca
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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