Basic Information
VIS ID
TVIS44005143
Fusion event
HTLV-1-chr3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q23
Reference genome
GRCh37/hg19
Start
139463738/139744896 (Hg38)
End
139463738/139744896 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/5306990; hsa-mir-1224/Downstream/11820980;
Nearest TSS
ENST00000440867/Upstream/55554; ENST00000504735/Downstream/92324;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/66868, chr3-CpG: 147/Downstream/189692
Nearby gene
NMNAT3(-66853) ;
Upstream sequence
AAAAATGATACACATGTGCATGCACCTGTATACACATTCACTGatgcacacacatatacacatgcacataccctcacatgtacacatacatatgcaCTTA
Downstream sequence
ACAAGCACATACACATACTTGTAGAAACACATGCACACACCTTCACACAAACTTGcacatacacacacctgtatgttcatatacacattcataaacctac
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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