Basic Information
VIS ID
TVIS44005164
Fusion event
HTLV-1-PIP5K1B integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q21.11
Reference genome
GRCh37/hg19
Start
71528816/68913900 (Hg38)
End
71528816/68913900 (Hg38)
Orient
+
Location type
Intronic
Target gene
PIP5K1B
Nearest miRNA
hsa-mir-101-2/Upstream/27680065; hsa-let-7a-1/Downstream/1896075;
Nearest TSS
ENST00000422679/Upstream/70625; ENST00000396366/Downstream/100213;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/133324, chr9-CpG: 41/Downstream/99591
Upstream sequence
GGAGATGAAGCTCTTTTTAATATTTTTTATCACTTTTTCAAAAGTTAATTCTCTCTTGGAATTTATTCTTTAAAAAAAAAAATCGGACCCCTTACAGGAT
Downstream sequence
CAGGATAGTGTCTTACTTTATCCAATAGTTCAGTTTGGACCACACAGCCTGACTTTGTCTCACCTGTAAAATTGCACAGTTCTCTTAGGCCTGTTCATGG
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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