VISDB Viral Integration Site DataBase

VIS ID

TVIS44005363

Fusion event

HTLV-1-RNF20 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr9

Cytoband

q31.1

Reference genome

Start

End

104323349/101561067 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-221-3p ; hsa-mir-1296-5p ; hsa-mir-1254 ; hsa-mir-3116 ; hsa-mir-3686 ; hsa-mir-921 ; hsa-mir-142-3p ; hsa-mir-6073 ; hsa-mir-4786-3p ; hsa-mir-3182 ; hsa-mir-20b-3p ; hsa-mir-3137 ; hsa-mir-877-3p ; hsa-mir-3174 ; hsa-mir-4535 ; hsa-mir-4750-5p ; hsa-mir-4776-5p ; hsa-mir-1273e ; hsa-mir-25-5p ; hsa-mir-658 ; hsa-mir-4722-5p ; hsa-mir-6087 ; hsa-mir-1827 ; hsa-mir-219b-3p ; hsa-mir-4649-3p ; hsa-mir-6840-3p ; hsa-mir-665 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-4695-5p ; hsa-mir-302f ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-3613-3p ; hsa-mir-548as-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-1303 ; hsa-mir-3674 ; hsa-mir-744-3p ; hsa-mir-6514-3p ; hsa-mir-6894-3p ; hsa-mir-6867-3p ; hsa-mir-6883-3p ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-4732-5p ; hsa-mir-6832-5p ; hsa-mir-661 ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-4781-3p ; hsa-mir-454-5p ; hsa-mir-483-5p

Nearest miRNA

hsa-let-7a-1/Upstream/3331850; hsa-mir-12126/Downstream/5039861;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/27117, chr9-CpG: 115/Downstream/176500

Upstream sequence

AAATAAGTATAACACTGTTGAGATTGTAAGTTCGCTTTATTCCTTCAACTTGGGCTAACATTTTGCCTCACTGGCAATAATAGGTGATACAATGGTGTCA

Downstream sequence

CTTATTTGTACATCCTACATAGGCAATGGAGGCAGCCCAGCTTGCAGATGACCTCAAAGCACAACTGGAGTTGGCTCAGAAGAAGCTACATGATTTTCAG