Basic Information
VIS ID
TVIS44005419
Fusion event
HTLV-1-LINC02217 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p15.1
Reference genome
GRCh37/hg19
Start
17407646/17407537 (Hg38)
End
17407646/17407537 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC02217
Nearest miRNA
hsa-mir-10397/Upstream/251545; hsa-mir-103a-1/Downstream/14528565;
Nearest TSS
ENST00000502646/Upstream/3391; ENST00000505844/Downstream/29200;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/52908, chr5-CpG: 30/Downstream/83811
Upstream sequence
tcaggtgatccacctgccttggcctcccaaagtgccaggattataggcgtgagccactgcaactggccATTTGGCTTTTTTAAACTAGTGGATGTTCCAT
Downstream sequence
AGGTGTTCACATGTTTTTGTGTGTTGTAAACATTTAATAACGACTACTAATAAGAACACAGATGAGTTTGCAAAGCTTGTGAAATTGCCCGGCTGATGGA
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate