Basic Information
VIS ID
TVIS44005436
Fusion event
HTLV-1-LOC102723516 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
39429340/38960136 (Hg38)
End
39429340/38960136 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC102723516
Nearest miRNA
hsa-mir-208a/Upstream/2007745; hsa-mir-1185-1/Downstream/8800859;
Nearest TSS
ENST00000550708/Upstream/11863; ENST00000557350/Downstream/81108;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/703804, chr14-CpG: 57/Downstream/142697
Nearby gene
LINC00639(No orient, 43254)
Upstream sequence
TAATAGTAAGAACTAACATTGCTATGTGTCAGGCACTTTTTATACAAGAAAATCACAGTAGGAATATtaatggctaattttattgagcactttttagcca
Downstream sequence
ccaggctctgtttctaggtgctttatgtgattcttttattgctcccaataattctcagtgagatactgttatgtccattttacaaatgaggcacagaggc
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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