Basic Information
VIS ID
TVIS44005464
Fusion event
HTLV-1-CENPW integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q22.32
Reference genome
GRCh37/hg19
Start
126673477/126352331 (Hg38)
End
126673477/126352331 (Hg38)
Orient
-
Location type
Intronic
Target gene
CENPW
Nearest miRNA
hsa-mir-10398/Upstream/6337074; hsa-mir-1202/Downstream/132300;
Nearest TSS
ENST00000381078/Upstream/12157; ENST00000485757/Downstream/766273;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/12090, chr6-CpG: 30/Downstream/291172
Nearest cancer related gene
CENPW(OG, No orient, 0)
Upstream sequence
agcaaatactgtgtcctgcaagccaagttacttagtatctgaccctttacagaagaagtttgctgacccctgTGTTAGATAATTCTTGCCCTAACCTCTG
Downstream sequence
TATTTTGCTTTTACTTGAGTTGCCAAAATGGCAAAAGAGGGATTGATACTCTAGAGGCTTTTTATTTATATTAGCTACACTGAAGTATGACACTTCTGAT
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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