Basic Information
VIS ID
TVIS44005496
Fusion event
HTLV-1-LOC107984320 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p15.1
Reference genome
GRCh37/hg19
Start
21748974/21727428 (Hg38)
End
21748974/21727428 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107984320
Nearest miRNA
hsa-mir-210/Upstream/1967345; hsa-let-7a-2/Downstream/1691677;
Nearest TSS
ENST00000527297/Upstream/443691; ENST00000530837/Downstream/386020;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1057129, chr11-CpG: 88/Downstream/465198
Nearby gene
NELL1(+151745) ;
Upstream sequence
ctcctcttcaccttctgccatgagtggaaccacccaaagtcccttaccagacgctaagcagatgctggcaccatgcctcttgtgcagcctacagaactgt
Downstream sequence
gagccaaataaacctattttctttataaattttccagcctcaggtattcttttatggcaacacataatggactaagatagaatctggttttattattttg
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate