Basic Information
VIS ID
TVIS44005566
Fusion event
HTLV-1-SLC9A9 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q24
Reference genome
GRCh37/hg19
Start
143253374/143534532 (Hg38)
End
143253374/143534532 (Hg38)
Orient
-
Location type
Intronic
Target gene
SLC9A9
miRNAs that regulate target gene
hsa-mir-124-3p
Nearest miRNA
hsa-let-7g/Upstream/9096626; hsa-mir-1224/Downstream/8031344;
Nearest TSS
ENST00000440867/Upstream/153194; ENST00000491798/Downstream/163617;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/412536, chr3-CpG: 217/Downstream/436359
Upstream sequence
GTGCTAATTGCTCTCTCCTGGAGCTCACTGCATTAGATGCCTCACCCAGAGCTCTGGAACTGCTACTCTCCAGGGTCAGGCAATGATGCTGCTTGGATAC
Downstream sequence
AGATGGTGGGATTTTTTTTTAGCAGGCAGACCACTGGCTGATGTTAAGCTTCAGGGCATTTTGATACACAAGGTTTGGGTTTACTCCCAGGAAGTGTCAG
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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