Basic Information
VIS ID
TVIS44005648
Fusion event
HTLV-1-chr3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q26.2
Reference genome
GRCh37/hg19
Start
170649980/170932191 (Hg38)
End
170649980/170932191 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/509029; hsa-mir-1224/Downstream/174473;
Nearest TSS
ENST00000440867/Upstream/23498; ENST00000467896/Downstream/75279;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/23139, chr3-CpG: 20/Downstream/96092
Nearby gene
EIF5A2(-23554) ;
Nearest cancer related gene
EIF5A2(OG, -23554) ;
Upstream sequence
aaaaaggaatgaagtacttatatatagatcagacttgaaaaattgtacagtgtaaaagaaaccagtcacaaaaggctgaatcttctataattccagttaa
Downstream sequence
gtgaagtgctcagaataggcaaatctataggttagtggttgtcaatgcttgggtagaggggagaatttaggagtgactagtaatggtacaaggttttttt
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate