Basic Information
VIS ID
TVIS44005717
Fusion event
HTLV-1-CFAP69 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
89894769/90265455 (Hg38)
End
89894769/90265455 (Hg38)
Orient
+
Location type
Intronic
Target gene
CFAP69
Nearest miRNA
hsa-mir-10525/Upstream/14350186; hsa-mir-10399/Downstream/1938560;
Nearest TSS
ENST00000635602/Upstream/7357; ENST00000418199/Downstream/4761;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/19914, chr7-CpG: 59/Downstream/55489
Upstream sequence
GCTAATTCAATTGCACTTCTGGGTAAGTTAAGATTTCCTTAAGGTATAGGGATGTAACATACGACAGGTCCTACTGACAAGGGAATATCTATTTTCCCCA
Downstream sequence
AGTTTCACTAAGAGGACTCCTTCTCCATGTCTAGGATCTTCTCTTGTTAGTGAATTAATCACAGTGTGCTTGGTGATAATTCTGGTATTGTATTCTGTTC
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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