Basic Information
VIS ID
TVIS44005748
Fusion event
HTLV-1-LOC100507283 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
124673959/124804063 (Hg38)
End
124673959/124804063 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LOC100507283
Nearest miRNA
hsa-let-7a-2/Upstream/1422551; hsa-mir-3167/Downstream/2184395;
Nearest TSS
ENST00000527297/Upstream/3153; ENST00000531888/Downstream/61323;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/3440, chr11-CpG: 85/Downstream/35263
Upstream sequence
agtagctgggtctacaggcatgcaccaacacatctggctaatttctaatttttttgctggtatataaaaatactaattgattatcttattttgtatctag
Downstream sequence
taatcctgATGGAGCAGTTGATTAAAATTGTATATCATTGCACGTCATTCTCTTTTTAAAAATCCAAGCCtagtgagaccctgtctctacaaaaagtttt
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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