Basic Information
VIS ID
TVIS44005754
Fusion event
HTLV-1-GLT1D1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q24.33
Reference genome
GRCh37/hg19
Start
129356288/128871743 (Hg38)
End
129356288/128871743 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA12E
Target gene
GLT1D1
Nearest miRNA
hsa-let-7i/Upstream/577565; hsa-mir-6763/Downstream/3710254;
Nearest TSS
ENST00000382841/Upstream/7607; ENST00000537367/Downstream/214257;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/17417, chr12-CpG: 25/Downstream/73315
Upstream sequence
CTCCCACAGTCCTAGCAACTTGGTCATTTTATGAACACAGTGTTTAAAGGCTCTAGACCTCCCCCTACTTCCTCCTCCTCTGATCTTTGTCCTCCTCTTC
Downstream sequence
TTTGTTTTACTCATGAttttgtgcaatattgctcctaaatgcacaccagttaattcacctggtgttcagctgaataaataactatttcattgctggaatt
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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