Basic Information
VIS ID
TVIS44005787
Fusion event
HTLV-1-chr22 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
35457487/35061494 (Hg38)
End
35457487/35061494 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1286/Upstream/1624825; hsa-let-7a-3/Downstream/274146;
Nearest TSS
ENST00000624155/Upstream/58632; ENST00000404699/Downstream/4642;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/1138845, chr22-CpG: 76/Downstream/195874
Nearby gene
ISX(+4642) ;
Upstream sequence
ggccactccacaatgaatacatatttcaaaccatcatattgtacatgataaatatataaaatttgtatttgtcatttaaaataaaTAATTTTTAAAAAAT
Downstream sequence
AATAAGAAAATGAAAATAGGATATATTaaaccaatgcactggggatgacagagaagaaagatggaagtgcttagttcttcacattgttttcatgcctgaa
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate