Basic Information
VIS ID
TVIS44005809
Fusion event
HTLV-1-chr6 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q12
Reference genome
GRCh37/hg19
Start
68383393/67673500 (Hg38)
End
68383393/67673500 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/10283288; hsa-mir-10524/Downstream/3703460;
Nearest TSS
ENST00000381078/Upstream/1966275; ENST00000449928/Downstream/215839;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/1578562, chr6-CpG: 37/Downstream/961340
Nearby gene
LOC102723883(No orient, 381850)
Upstream sequence
agaagtttctcccaaaatggaattcatggcacttttttgtttttcccaaggagtcccagggcattagaagttatcttagggcctctcctgcatgcattaa
Downstream sequence
taatggaaaggcaaagtggagagaagtaatttaatctactgagaaagaaaaaaaaacaactttttccagcaaagcaaggtccaagaagagaaaaggataa
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate