Basic Information
VIS ID
TVIS44005811
Fusion event
HTLV-1-LOC112267962 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
81353940/80644223 (Hg38)
End
81353940/80644223 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC112267962
Nearest miRNA
hsa-mir-10398/Upstream/2104914; hsa-mir-1202/Downstream/9668519;
Nearest TSS
ENST00000381078/Upstream/177265; ENST00000614959/Downstream/907463;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/537254, chr6-CpG: 231/Downstream/1107193
Nearby gene
BCKDHB(+297953) ;
Upstream sequence
gcctactaaattggaatctgcattttaccgagtttcccaCAATAAAGCTATCCTTTAGTCCTGTAAGCAGTTCCACATGGAAAGTGTATTTTCCACACAA
Downstream sequence
ATAGCTGTTTGATAAAATTCAGCTTTAAAACTAAACTAACCTCTCAATTGGTTCTGAATTCAGAAAAGCAACTGGATTTTAATTTTTTTATCTGATACCA
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate