VISDB Viral Integration Site DataBase

VIS ID

TVIS44005844

Fusion event

HTLV-1-MED17 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr11

Cytoband

q21

Reference genome

Start

End

93536394/93803228 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-185-5p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106a-5p ; hsa-mir-142-5p ; hsa-mir-106b-5p ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-302d-3p ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-340-5p ; hsa-mir-20b-5p ; hsa-mir-488-3p ; hsa-mir-520e ; hsa-mir-520a-3p ; hsa-mir-526b-3p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-519d-3p ; hsa-mir-520d-3p ; hsa-mir-616-3p ; hsa-mir-302e ; hsa-mir-3609 ; hsa-mir-548ah-5p ; hsa-mir-4729 ; hsa-mir-5590-3p ; hsa-mir-5696 ; hsa-mir-6500-3p ; hsa-mir-510-3p ; hsa-mir-5692a ; hsa-mir-4796-3p ; hsa-mir-6862-5p ; hsa-mir-4253 ; hsa-mir-3945 ; hsa-mir-5787 ; hsa-mir-4505 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-3622b-5p ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-500a-5p ; hsa-mir-512-3p ; hsa-mir-6499-3p ; hsa-mir-6807-5p ; hsa-mir-1273e ; hsa-mir-1273g-3p ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-2467-3p ; hsa-mir-3612 ; hsa-mir-377-5p ; hsa-mir-4257 ; hsa-mir-4459 ; hsa-mir-455-3p ; hsa-mir-4695-5p ; hsa-mir-6086 ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-6516-5p ; hsa-mir-665 ; hsa-mir-6840-3p

Nearest miRNA

hsa-mir-10392/Upstream/69464; hsa-let-7a-2/Downstream/663267;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/18264, chr11-CpG: 49/Downstream/46893

Upstream sequence

actacGATACCCTTAGTTGCTTTATTTCAGCAGACGTAACTAGCCACAGTAAAGCAAAGCATACTGTGAAACACAAAATAACGACCCTTAGGAGTAGGGG

Downstream sequence

CAGAAAAATACATTTATAATGCTATTGTTTTCTTTCTTTTTGATTTTTCCTATGTACAGTCATTTCCAATATAATACTATTTTTAATGCAGAGGTTTTAA