Basic Information
VIS ID
TVIS44005905
Fusion event
HTLV-1-LOC105376177 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
103116190/100353908 (Hg38)
End
103116190/100353908 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105376177
Nearest miRNA
hsa-let-7a-1/Upstream/2124691; hsa-mir-12126/Downstream/6247020;
Nearest TSS
ENST00000422679/Upstream/969; ENST00000398977/Downstream/73248;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/776, chr9-CpG: 23/Downstream/57699
Nearby gene
TEX10(-931) ;
Upstream sequence
GCCACATCACCACAATCTGCCTGGAATCGACCATAACCataaatatttgggagtcattggcattatgtggcattatattctgtttaaagctatgagacta
Downstream sequence
gatcagaAGAGGAAAGATTtattgccaaccagacaagtccctggaactccaaacttgtatccaacagttttttcaatgtttccttcagatatccagtata
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate