Basic Information
VIS ID
TVIS44006002
Fusion event
HTLV-1-chr4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
68422095/67556377 (Hg38)
End
68422095/67556377 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/1279449; hsa-mir-1243/Downstream/9017191;
Nearest TSS
ENST00000502981/Upstream/10771; ENST00000265404/Downstream/2351;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/10720, chr4-CpG: 45/Downstream/144508
Nearby gene
STAP1(+2351) ;
Upstream sequence
AGCAAGATTTTTGCATTTTGTAGTCTTTTTCAGGGAGATATAATTTGATTCTTGGTATATTAAGAATGAATTTGACGAACAAATCAGCAGACCAAAGTAA
Downstream sequence
CTTACTGTGTCTGATTAGCTGTTTTTAAATTGTTGCTTATATTTTAAAGGCAAAAAAAAAACTAAGTGCTTATTTAACAACAACAAAAAATCCCCTTTAC
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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