Basic Information
VIS ID
TVIS44006009
Fusion event
HTLV-1-LOC105378980 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
56192299/56896472 (Hg38)
End
56192299/56896472 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA5H
Target gene
LOC105378980
Nearest miRNA
hsa-mir-10397/Upstream/1387546; hsa-mir-103a-1/Downstream/1633571;
Nearest TSS
ENST00000502646/Upstream/10519; ENST00000423328/Downstream/12788;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/79390, chr5-CpG: 113/Downstream/12663
Nearby gene
MAP3K1(+321) ;
Upstream sequence
tcttccttgaccttaatggccttaattttttaaagatttcagattattgttttatagaagctcttcaaattgagtttgtctggtgctgcttcttgattag
Downstream sequence
attcagagtatgcacttttggcaggaacatcacagaggtgatgctgtgctcctctcggtgtgtcatgtcaggaggcatagaggtcgtttgccccatcact
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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