Basic Information
VIS ID
TVIS44006046
Fusion event
HTLV-1-LOC105372889 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
208475688/208302343 (Hg38)
End
208475688/208302343 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105372889
Nearest miRNA
hsa-mir-101-1/Upstream/499820; hsa-mir-1182/Downstream/1129790;
Nearest TSS
ENST00000473358/Upstream/58023; ENST00000415754/Downstream/309849;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/58059, chr1-CpG: 72/Downstream/929157
Nearby gene
PLXNA2(-58023) ;
Upstream sequence
ATGCTGTGGAGCATATCACAGATGAAGCTAATATTTCGATCTCTATCTCTCTGTGTTCTGAGTCTTCTTTCTCCTGGACTTGAGAGGAGAAGCAAGGGGT
Downstream sequence
GTTACTACCTGAGCACCTGGCCCCTCAGTGACTGTACATCTGATGGTGGCCAGGATGTCCTTTCCAGATTTTCTGCCTTAGTCTGTTTTTATCACCTGTC
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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