VISDB Viral Integration Site DataBase

VIS ID

TVIS44006062

Fusion event

HTLV-1-CAPRIN1 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr11

Cytoband

p13

Reference genome

Start

End

34107933/34086386 (Hg38)

Orient

+

Location type

Exonic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-124-3p ; hsa-mir-1-3p ; hsa-mir-34a-5p ; hsa-mir-21-5p ; hsa-mir-1296-5p ; hsa-mir-92b-3p ; hsa-mir-484 ; hsa-mir-222-3p ; hsa-mir-92a-3p ; hsa-mir-3678-3p ; hsa-mir-2467-3p ; hsa-mir-223-3p ; hsa-mir-6868-3p ; hsa-mir-3667-3p ; hsa-mir-6734-3p ; hsa-mir-589-3p ; hsa-mir-548c-3p ; hsa-mir-587 ; hsa-mir-3117-3p ; hsa-mir-1197 ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6509-5p ; hsa-mir-4677-5p ; hsa-mir-6844 ; hsa-mir-6873-3p ; hsa-mir-6867-3p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-331-5p ; hsa-mir-22-5p ; hsa-mir-2116-5p ; hsa-mir-567 ; hsa-mir-942-5p ; hsa-mir-6845-3p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-6832-3p ; hsa-mir-4469 ; hsa-mir-4678 ; hsa-mir-452-3p ; hsa-mir-6777-3p ; hsa-mir-483-3p ; hsa-mir-6715a-3p ; hsa-mir-141-5p ; hsa-mir-497-3p ; hsa-mir-33b-5p ; hsa-mir-33a-5p ; hsa-mir-302d-5p ; hsa-mir-302b-5p ; hsa-mir-4317 ; hsa-mir-522-3p ; hsa-mir-224-3p ; hsa-mir-4694-3p ; hsa-mir-1-5p ; hsa-mir-129-5p ; hsa-mir-2113 ; hsa-mir-5010-3p ; hsa-mir-758-3p

Nearest miRNA

hsa-mir-210/Upstream/5608838; hsa-let-7a-2/Downstream/855451;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/33230, chr11-CpG: 60/Downstream/18895

Upstream sequence

TCCTAACTTAACCTGTAGGATTCAATGCTGGATTTTGAAAATCAGACACTTGATCCTGCCATTGTATCTGCACAGCCTATGAATCCAACACAAAACATGG

Downstream sequence

ACATGCCCCAGCTGGTTTGCCCTCCAGGTTAGTAGTGGTACATTTTTATGTGAGAGAGAAATATAAGGCCAGTACTTTCAGGTTTTAAAAAGATTGTGAA