VISDB Viral Integration Site DataBase

VIS ID

TVIS44006078

Fusion event

HTLV-1-RNASEH2B integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr13

Cytoband

q14.3

Reference genome

Start

End

51537044/50962908 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-328-3p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-561-5p ; hsa-mir-6778-5p ; hsa-mir-1233-5p ; hsa-mir-6825-5p ; hsa-mir-7106-5p ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6878-5p ; hsa-mir-766-5p ; hsa-mir-6077 ; hsa-mir-4708-3p ; hsa-mir-4481 ; hsa-mir-4745-5p ; hsa-mir-6736-5p ; hsa-mir-4701-3p ; hsa-mir-1262 ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-542-3p ; hsa-mir-661 ; hsa-mir-4252 ; hsa-mir-2277-3p ; hsa-mir-6776-5p ; hsa-mir-4793-3p ; hsa-mir-3605-3p ; hsa-mir-766-3p ; hsa-mir-6742-3p ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-508-5p ; hsa-mir-665 ; hsa-mir-6771-5p ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-6787-3p ; hsa-mir-6746-5p ; hsa-mir-4768-3p ; hsa-mir-5690 ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-216b-5p ; hsa-mir-216a-5p ; hsa-mir-34b-3p

Nearest miRNA

hsa-mir-15a/Upstream/913707; hsa-mir-1267/Downstream/385659;

Nearest TSS

Nearest CpG islands

None/Target, chr13-CpG: 551/Upstream/52453, chr13-CpG: 86/Downstream/259073

Upstream sequence

ctttttgtttatctcatttgggagtgtattaagctccttgaacttttgagtttttaattttcatcaaatatggaaaatttctggccaatatttctttaaa

Downstream sequence

tacctttttccattctttcctcccttttctccctatcccctcagcttctggcctccaatttcatgtatgctggaacacttggtattgtcctccaggtcct