Basic Information
VIS ID
TVIS44006166
Fusion event
HTLV-1-LINC02028 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q29
Reference genome
GRCh37/hg19
Start
193737154/194019365 (Hg38)
End
193737154/194019365 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC02028
Nearest miRNA
hsa-let-7g/Upstream/4189356; hsa-mir-3137/Downstream/1115141;
Nearest TSS
ENST00000440867/Upstream/15706; ENST00000615650/Downstream/50738;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/15863, chr3-CpG: 22/Downstream/38937
Nearby gene
LINC02026(-15706) ;
Upstream sequence
CAGTAGGTCACTACCCCTTTCATCTTAGCAAGCGtctgtgcttcaattccctcctccagagggtggagataataacagaacttattcctgggtacatatg
Downstream sequence
ggaattaaataagttaatatttctaaagcaaataaaatagtgcttggcacagagtaagcataatattcagtgttttgttaAAATGCTGGGTTATTAAACG
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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