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VISDB
Viral Integration Site DataBase
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TVIS44006321
Basic Information
VIS ID
TVIS44006321
Fusion event
HTLV-1-CSTA integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
122044420/122325573 (Hg38)
End
122044420/122325573 (Hg38)
Orient
+
Location type
Intronic
Target gene
CSTA
Nearest miRNA
hsa-let-7g/Upstream/1275858; hsa-mir-12124/Downstream/836221;
Nearest TSS
ENST00000440867/Upstream/311;
ENST00000469967/Downstream/40001;
Nearest CpG islands
None/Target,
chr3-CpG: 148/Upstream/95095
,
chr3-CpG: 41/Downstream/58431
Upstream sequence
GTTCAGGTTTCTTTACAACTAAGATGAAATAAGAGTTTTTCAGATGAAGCCTCAAATAATCCCCAAACTGTGAgtgtgaccttgagcaaatcacatttct
Downstream sequence
tctctgagcttcattttctccatgggtaaaagaatttgtattgtatcttctctaaagctcttacaagatatgattctagaattACTAATTCAGTTTCTGA
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Sample Information
×
Sample name
ATL219
Sample type
Nontumor
Gender
Female
CpG Island Information
×
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