Basic Information
VIS ID
TVIS44006356
Fusion event
HTLV-1-SLC12A9 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
100455165/100857543 (Hg38)
End
100455165/100857543 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA7F
Target gene
SLC12A9
Nearest miRNA
hsa-mir-10525/Upstream/500822; hsa-mir-10399/Downstream/10493;
Nearest TSS
ENST00000635602/Upstream/513; ENST00000475623/Downstream/1193;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/4548, chr7-CpG: 32/Downstream/8593
Upstream sequence
cagaatggcccagcatgacttaaacagatcaggatcacccaggagtggagagaagggaggcctgactatgggctggggagggcaggagccggggagctgg
Downstream sequence
aggtggcctgagatagacaggtgggggattcagccaggagctgggagcagagagggaaggcatctcaggaaagagCTTGAgaccaggtgcggtggctcac
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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