Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene116158364115324932115744330115690206115693037115716526115718645115713372115714511115711660115712018115694082115694291115730502115730651115741648
Basic Information
VIS ID
TVIS44006457
Fusion event
HTLV-1-LOC101928775 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q33.1
Reference genome
GRCh37/hg19
Start
118503927/115741648 (Hg38)
End
118503927/115741648 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA9E ; FRA9B
Target gene
LOC101928775
Nearest miRNA
hsa-let-7a-1/Upstream/1532119; hsa-mir-12126/Downstream/4503331;
Nearest TSS
ENST00000422679/Upstream/150; ENST00000416507/Downstream/2216;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/1129852, chr9-CpG: 77/Downstream/412435
Upstream sequence
tcgcagttccccatctgtaaaatgaatataTTTGTTCTATGGAATCACTCATTTTTTAGGTTATTTCTGACTCTTTATTTTCAGTGACGCTGACTTAAGT
Downstream sequence
CATCTTTAGAAACCTTACAGAACTCTATTAAAGCATAGCATATGGAACTATTGATACATCCTTATGTTATATGAGATTTACCAATATTTTCTGCTTGTAA
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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