Basic Information
VIS ID
TVIS44006546
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q22
Reference genome
GRCh37/hg19
Start
155911132/155941341 (Hg38)
End
155911132/155941341 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/594896; hsa-mir-1182/Downstream/9932;
Nearest TSS
ENST00000473358/Upstream/6941; ENST00000368318/Downstream/369;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/6825, chr1-CpG: 22/Downstream/9519
Nearby gene
RXFP4(+348) ;
Upstream sequence
TTTGGGCCCCAAGGGAACACTTTCTGCAGAGGAGGGAGGCCTCTGCACTGTTAGGAACAGAGGCAGCTCTAGTTTGGTTCCTGTCATCTCTGGGACAGGG
Downstream sequence
AACCTCCAGCTCTCTCCCTGGGGTGGAGGCTTGGGGCTGCCCTCCATAGCGGGGTAACTCTCCCTTCTCCCCTCCCTCTCTGCCATTTAGAGCCCCTCTT
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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