Basic Information
VIS ID
TVIS44006594
Fusion event
HTLV-1-NALCN-AS1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q32.3
Reference genome
GRCh37/hg19
Start
101532813/100880559 (Hg38)
End
101532813/100880559 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA13D
Target gene
NALCN-AS1
Nearest miRNA
hsa-mir-1297/Upstream/1237410; hsa-mir-1267/Downstream/1087083;
Nearest TSS
ENST00000623511/Upstream/172234; ENST00000474233/Downstream/63805;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/205090, chr13-CpG: 117/Downstream/535206
Upstream sequence
cctactctgtggaacccctgttcccaggacaatgcttcacacagggtgtgcaggcattgaatatttgttgaatgaacaaatAATTTTCAGTGTTGGAAAA
Downstream sequence
TATGTttaaatatgcatgttaaaaattttaaggtaattatttagagaatagaagtaatagaggtaatagccaagtaatcagaggagaaaaatggaataaa
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate