Basic Information
VIS ID
TVIS44006659
Fusion event
HTLV-1-chr2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q37.3
Reference genome
GRCh37/hg19
Start
238349442/237440799 (Hg38)
End
238349442/237440799 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA2J
Nearest miRNA
hsa-mir-10b/Upstream/4890226; hsa-mir-149/Downstream/70132;
Nearest TSS
ENST00000437798/Upstream/5977; ENST00000429898/Downstream/44629;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/68673, chr2-CpG: 71/Downstream/34234
Nearby gene
COL6A3(-26592) ;
Upstream sequence
GCCTGGTCTTGCTTGTTGTCTTTTTGAGGCATGGGAAGAcaaatttaaaacaaattgaaaaacaaggaagtgccagatgggagatagaaaacatcaccta
Downstream sequence
tattactgggggaggccaagttggaggatgtgcctcatggtgAAAACCAAATGAGACAGCTTCAGAAACAGGACAGCTTCAGAAACAGGACAGCTCCAGA
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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