VISDB Viral Integration Site DataBase

VIS ID

TVIS44006712

Fusion event

HTLV-1-F2RL1 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr5

Cytoband

q13.3

Reference genome

Start

End

76128973/76833148 (Hg38)

Orient

+

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-190a-3p ; hsa-mir-410-3p ; hsa-mir-511-3p ; hsa-mir-1277-5p ; hsa-mir-4495 ; hsa-mir-5011-5p ; hsa-mir-223-5p ; hsa-mir-205-3p ; hsa-mir-640 ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-1224-3p ; hsa-mir-6813-3p ; hsa-mir-744-3p ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-367-5p ; hsa-mir-1266-3p ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-5089-5p ; hsa-mir-6878-3p ; hsa-mir-466 ; hsa-mir-4672 ; hsa-mir-3941 ; hsa-mir-6744-3p ; hsa-mir-4757-5p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-6778-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-150-5p ; hsa-mir-212-5p ; hsa-mir-186-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-512-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-6894-3p ; hsa-mir-6514-3p ; hsa-mir-6873-3p ; hsa-mir-5581-5p ; hsa-mir-4297 ; hsa-mir-4763-5p ; hsa-mir-942-5p ; hsa-mir-1304-3p ; hsa-mir-6747-3p ; hsa-mir-483-3p

Nearest miRNA

hsa-mir-10397/Upstream/3954485; hsa-mir-103a-1/Downstream/6007007;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/12884, chr5-CpG: 104/Downstream/120462

Upstream sequence

TGTAATGTGCTTATTGGCTTTTTCTATGGCAACATGTACTGTTCCATTCTCTTCATGACCTGCCTCAGTGTGCAGAGGTATTGGGTCATCGTGAACCCCA

Downstream sequence

TGGGGCACTCCAGGAAGAAGGCAAACATTGCCATTGGCATCTCCCTGGCAATATGGCTGCTGATTCTGCTGGTCACCATTCCTTTGTATGTCGTGAAGCA