Basic Information
VIS ID
TVIS44006739
Fusion event
HTLV-1-chr7 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q31.32
Reference genome
GRCh37/hg19
Start
122943831/123303777 (Hg38)
End
122943831/123303777 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10525/Upstream/6283458; hsa-mir-10399/Downstream/3754311;
Nearest TSS
ENST00000635602/Upstream/103791; ENST00000419832/Downstream/152852;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/416872, chr7-CpG: 43/Downstream/228901
Nearby gene
SLC13A1(-103806) ;
Upstream sequence
gaagaaaaagaaacccttggaaactgttgctggaaatgtaaattagtacaaccactatggagaatggtatggaggttcctaaaaaaactaaaaatagaac
Downstream sequence
tacatgtgatccagcaatctcactgctaggtatataaccaaaagaaaaaaatcaatattttgaagagatatctgcactcccatatttattgcagcactat
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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