Basic Information
VIS ID
TVIS44006796
Fusion event
HTLV-1-chr16 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p11.1
Reference genome
GRCh37/hg19
Start
34952063/35717692 (Hg38)
End
34952063/35717692 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1225/Upstream/1554019; hsa-mir-11401/Downstream/14574924;
Nearest TSS
ENST00000527434/Upstream/77663; ENST00000562769/Downstream/25576;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/142189, chr16-CpG: 158/Downstream/383459
Nearby gene
LINC02167(+28860) ;
Upstream sequence
ttggtgtataagaaggcttgtgatttttgtacattgattttgtatcctgagactttgctgaagttgcttatcagcttaaggagattttgggctgagacaa
Downstream sequence
tggggttttctagatatactatcaggtcatctgcaaacagggacaatttgacttcctcttttcctaattgaataccctttatttccttctcctgcctgat
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate