Basic Information
VIS ID
TVIS44006879
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
168655781/168686543 (Hg38)
End
168655781/168686543 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/310922; hsa-mir-1182/Downstream/1464835;
Nearest TSS
ENST00000473358/Upstream/110070; ENST00000420691/Downstream/42721;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/459942, chr1-CpG: 153/Downstream/418985
Nearby gene
DPT(-8914) ;
Upstream sequence
catggaggacattaatgcctttttaagaagttgagtttaaacccatctactatgaggaacatggcaagtgtaagcattggagtcaaagatttccatgtta
Downstream sequence
gatcactctggcatttgtgtgtaagtggaatttgaaggggacagcaagaacaaagacagctacattaggtagaaagccattgcagtagtctggaatagag
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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