VISDB Viral Integration Site DataBase

VIS ID

TVIS44006881

Fusion event

HTLV-1-DARS2 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr1

Cytoband

q25.1

Reference genome

Start

End

173794950/173825812 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-30a-5p ; hsa-mir-186-5p ; hsa-mir-222-3p ; hsa-mir-24-3p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-6508-3p ; hsa-mir-4726-5p ; hsa-mir-4640-5p ; hsa-mir-661 ; hsa-mir-6853-5p ; hsa-mir-3116 ; hsa-mir-1254 ; hsa-mir-664a-5p ; hsa-mir-4794 ; hsa-mir-6872-3p ; hsa-mir-6504-3p ; hsa-mir-4438 ; hsa-mir-6869-5p ; hsa-mir-4279 ; hsa-mir-1200 ; hsa-mir-365b-5p ; hsa-mir-365a-5p ; hsa-mir-8052 ; hsa-mir-3199 ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-544b ; hsa-mir-4324 ; hsa-mir-660-3p ; hsa-mir-455-5p ; hsa-mir-8062 ; hsa-mir-552-3p ; hsa-mir-7977 ; hsa-mir-20b-3p ; hsa-mir-4539 ; hsa-mir-146a-3p ; hsa-mir-5690 ; hsa-mir-2114-5p ; hsa-mir-5588-3p ; hsa-mir-3664-5p ; hsa-mir-514a-5p ; hsa-mir-4714-5p ; hsa-mir-6732-3p ; hsa-mir-504-5p ; hsa-mir-4322 ; hsa-mir-4296 ; hsa-mir-4265 ; hsa-mir-4417 ; hsa-mir-2861 ; hsa-mir-6735-3p ; hsa-mir-640 ; hsa-mir-4713-5p ; hsa-mir-2116-3p ; hsa-mir-532-3p ; hsa-mir-8079 ; hsa-mir-1245a ; hsa-mir-1273e ; hsa-mir-4266 ; hsa-mir-4722-5p ; hsa-mir-6134 ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-6840-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-4779 ; hsa-mir-4695-5p ; hsa-mir-34b-3p ; hsa-mir-4284 ; hsa-mir-8057

Nearest miRNA

hsa-mir-101-1/Upstream/1681168; hsa-mir-1182/Downstream/2142558;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/855, chr1-CpG: 63/Downstream/42222

Upstream sequence

cccgcctccgcctcccatagtgctgggattacaggcgtgagccaccgcgcccggcTTTTCCCCTGTTCTTAACTGGATAGCCTTATGTGTAGAAGCGAAA

Downstream sequence

TTCACTCTCATTATATTCATTATACGGCAGTTTTTTTTCCCTGAGTTTTTAGAAAGACCACAAAAAGGTAACCACGTAATATATAGAATACTCTGCTTTT