Basic Information
VIS ID
TVIS44006974
Fusion event
HTLV-1-ARID5A integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
97205279/96539542 (Hg38)
End
97205279/96539542 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
ARID5A
miRNAs that regulate target gene
hsa-mir-324-5p
Nearest miRNA
hsa-mir-1285-2/Upstream/7727088; hsa-mir-10b/Downstream/258736;
Nearest TSS
ENST00000437798/Upstream/2197; ENST00000497920/Downstream/7848;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1492, chr2-CpG: 48/Downstream/10509
Upstream sequence
TCAACCACCGCCCGACTGCCTTCACCTTCCTGCCTTTGCATACCTGCCTTTGCTTCGCCAGGTTGGTTGGGCCCTGGCCAGAGCTGGCCCCCTACTCTCT
Downstream sequence
CAGGTAACAGGTAGCAGTTTTTTAAATGGAATCTCAGTAGGTATCAACAGGTCTTTCCTCCTTCCTCAAGATTATGGAGATAACACCCCTTATTCAAAGA
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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