Basic Information
VIS ID
TVIS44006991
Fusion event
HTLV-1-LOC105377008 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p24.1
Reference genome
GRCh37/hg19
Start
28137941/28096450 (Hg38)
End
28137941/28096450 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105377008
Nearest miRNA
hsa-mir-12127/Upstream/2431511; hsa-let-7g/Downstream/3065254;
Nearest TSS
ENST00000440867/Upstream/37182; ENST00000468330/Downstream/145134;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/365999, chr3-CpG: 60/Downstream/144885
Nearby gene
CMC1(+145183) ;
Upstream sequence
tctttattcctgattttagcaacttgagtattctattttttcccttttgtcagtctagccaatagtttgtcaatttcattggtctcctgaaataaccaag
Downstream sequence
tttggttttgttgatttttctcctttttttatttcccatcttattaattttattctaatctttattattcctgatttttctctgttgcttttctatttcc
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate