Basic Information
VIS ID
TVIS44007001
Fusion event
HTLV-1-LOC101926886 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q13.31
Reference genome
GRCh37/hg19
Start
114929655/115210808 (Hg38)
End
114929655/115210808 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC101926886
Nearest miRNA
hsa-let-7g/Upstream/467283; hsa-mir-12124/Downstream/1639469;
Nearest TSS
ENST00000440867/Upstream/63537; ENST00000459855/Downstream/40388;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/62531, chr3-CpG: 48/Downstream/447612
Nearby gene
ZBTB20(-63528) ;
Upstream sequence
atTATTAAATGAACAATTCAATCTCTAACTAAAATTAATGATGATTTGGTATATGTCTCATGCTGTTCATGTTTCTTTTCCCTTTTAAAATGTGCATGTT
Downstream sequence
TACTTTCATACAATAAGTGTATCATCATCCAGATATAGgcattacctgggtagtgtaagagcttcttacaaatgcagaatctcaggctcttagacctaat
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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