Basic Information
VIS ID
TVIS44007015
Fusion event
HTLV-1-LOC107986215 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q21.22
Reference genome
GRCh37/hg19
Start
82681623/81760469 (Hg38)
End
82681623/81760469 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107986215
Nearest miRNA
hsa-mir-12113/Upstream/5184843; hsa-mir-1243/Downstream/992868;
Nearest TSS
ENST00000502981/Upstream/288541; ENST00000609552/Downstream/283600;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/288197, chr4-CpG: 73/Downstream/283548
Nearby gene
RASGEF1B(-288541) ;
Upstream sequence
gagcaaaatcacccctgctggaacaactgGCTTAAGAAGACTACTGGGGACTTTTAGGAAACTCTTTGTTTTTTAACATGGGGGACCTCTAGCCAGGTTT
Downstream sequence
CACAACATAGCTAACAGCTTCAAACAAAAATGCAAAACTATTCCTTTCTTTCATGTAACTACAGTCCTATGTCAGCCTATTTCATTCCATCTAATGTTCC
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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