Basic Information
VIS ID
TVIS44007016
Fusion event
HTLV-1-LOC101928978 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q21.23
Reference genome
GRCh37/hg19
Start
84976304/84055151 (Hg38)
End
84976304/84055151 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LOC101928978
Nearest miRNA
hsa-mir-12113/Upstream/1301721; hsa-mir-1243/Downstream/1667317;
Nearest TSS
ENST00000502981/Upstream/323396; ENST00000511298/Downstream/325038;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/518444, chr4-CpG: 39/Downstream/426460
Upstream sequence
agcacagacactggagaagaatgtctggttcaaccctagctcagtggcctcctagcttccataggccttggttttctcatttgtaaaataagttggtttt
Downstream sequence
gaaactacatcaagctcttagaacagtgccttaaacatcaatgctatgtagatgttagctattattCTACTCCACATGCAGCACATGTAGGGCTAGAGGT
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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