Basic Information
VIS ID
TVIS44007047
Fusion event
HTLV-1-LOC112267857 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
80339730/79630013 (Hg38)
End
80339730/79630013 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC112267857
Nearest miRNA
hsa-mir-10398/Upstream/1090704; hsa-mir-1202/Downstream/10682729;
Nearest TSS
ENST00000381078/Upstream/68881; ENST00000369838/Downstream/1270;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/92310, chr6-CpG: 84/Downstream/317014
Nearby gene
SH3BGRL2(+1270) ;
Upstream sequence
TCCAAACTGAAGAAAATGCTGACTTTTATAAAGATTTGCATTTATATAGGAAATACGGTATCTACTTTTAAGAAAATTATTTTCTATTTTATAAACGTGC
Downstream sequence
ATTTCCACATTTATGGTAGCAAAATTAAAGTACATTTGCCGAGAGATACTAAAGACAGCAAAACTTCTATTTAAAATTTTAAACACGAAGAAGAAATAAA
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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